Package index • vimcheck

Package-level documentation

vimcheck vimcheck-package: vimcheck: Diagnostics for Vaccine Impact Modelling Consortium Burden and Impact Estimates

Diagnostic functions

Package diagnostic functions.

basic_burden_sanity(): Sanity checks on burden estimates
check_demography_alignment(): Check incoming burden cohort size against interpolated population
validate_complete_incoming_files(): Validate files in a burden estimate
validate_file_dict_template(): Validate file dictionary template
validate_template_alignment(): Check incoming burden set against template

Plotting functions

Package plotting functions.

plot_compare_demography() plot_age_patterns() plot_global_burden_decades() plot_global_burden() plot_coverage_set() plot_fvp(): Plot burden and impact diagnostics
theme_vimc(): Plotting theme for vimcheck

Internal functions

Internal helper functions.

make_novax_scenario(): Make data for a no-vaccination scenario

Data

Package data.

eg_burden_template: Example of VIMC burden template provided to modellers
eg_wpp: Example of UN-WPP time-series data

Constants

Package constants.

file_dict_colnames scenario_data_colnames: Package constants